Chocolate Thumbprint Cookies with Rich Chocolate Ganache Recipe
Introduction
These Chocolate Thumbprint Cookies are rich, fudgy, and filled with a smooth chocolate ganache center. They offer a delightful balance of tender cocoa cookies and creamy chocolate, making them perfect for any chocolate lover’s cookie jar.

Ingredients
- 1 1/2 cups (188 g) all-purpose flour, spooned and leveled
- 1/2 cup (40 g) Dutch process cocoa powder
- 1/2 tsp salt
- 1/2 tsp baking powder
- 3/4 cup (168 g) unsalted butter, softened
- 3/4 cup (165 g) light brown sugar, packed
- 1/4 cup (50 g) granulated white sugar
- 2 egg yolks, at room temperature
- 1 1/2 tsp vanilla bean paste or extract
- 1 cup (200 g) semi-sweet chocolate chips
- 1/2 cup (120 ml) heavy whipping cream
- Nonpareils for sprinkling on top (optional)
Instructions
- Step 1: Line two baking sheets with parchment paper and set aside. In a medium bowl, whisk together the flour, cocoa powder, salt, and baking powder. Set aside.
- Step 2: In a large bowl, cream the softened butter, light brown sugar, and granulated sugar using an electric mixer for about two minutes until fluffy.
- Step 3: Add the egg yolks and vanilla bean paste (or extract) to the butter mixture and beat until pale and fluffy, about 1-2 minutes.
- Step 4: Gradually mix in the dry ingredients just until combined, taking care not to overmix.
- Step 5: Scoop the dough into 34 portions, approximately 1 tablespoon each, and roll into balls. Place the dough balls on the prepared baking sheets.
- Step 6: Using a 1/4 teaspoon, press down on each dough ball to create an indent. Chill the dough for at least one hour. You can chill all dough together on one sheet and transfer to multiple sheets before baking.
- Step 7: Preheat the oven to 350°F (175°C). Arrange the chilled dough balls about 1 1/2 inches apart on baking sheets.
- Step 8: Bake for 9-11 minutes, ideally about 10 minutes. When done, lightly press the centers again with a 1/4 teaspoon to restore the indents.
- Step 9: While cookies are still warm, use a circular cookie cutter or biscuit cutter to gently go around each cookie, giving them a perfect round shape and restoring size if they expanded during baking.
- Step 10: Let the cookies cool on the baking sheet for 5 minutes, then transfer to a cooling rack to cool completely.
- Step 11: For the ganache, place the chocolate chips in a small bowl. Heat the heavy cream until nearly boiling, then pour over the chocolate chips. Let sit for 1 minute, then stir until smooth.
- Step 12: Fill each cookie indent with about 1 teaspoon of the chocolate ganache. Sprinkle with nonpareils if desired.
- Step 13: Chill cookies in the refrigerator for 10-15 minutes to allow the ganache to set.
Tips & Variations
- Chilling the dough thoroughly helps the cookies keep their shape and makes them easier to handle when pressing indents.
- For a different filling, try raspberry jam or salted caramel instead of chocolate ganache.
- Use high-quality cocoa powder and chocolate for the best rich chocolate flavor.
- If you don’t have vanilla bean paste, pure vanilla extract works just as well.
Storage
Store leftover cookies in an airtight container at room temperature for up to three days. If you’ve filled them with ganache, refrigeration is recommended. Reheat slightly before serving if you prefer a softer ganache filling.
How to Serve

Serve this delicious recipe with your favorite sides.
FAQs
Can I freeze these cookies?
Yes, you can freeze the baked cookies without ganache in an airtight container for up to one month. Thaw at room temperature and add ganache before serving.
What if I don’t have Dutch process cocoa?
You can substitute natural cocoa powder, but the flavor will be slightly different. Dutch process cocoa is less acidic and gives a smoother chocolate taste.
PrintChocolate Thumbprint Cookies with Rich Chocolate Ganache Recipe
These Chocolate Thumbprint Cookies are rich, fudgy, and irresistibly chocolatey, featuring a soft cocoa cookie base with a luscious homemade chocolate ganache center. Perfectly sized for snacking and ideal for parties or gifting, these cookies combine a tender crumb with a smooth, creamy filling, finished with optional festive nonpareils for a delightful crunch and visual appeal.
- Prep Time: 20 minutes
- Cook Time: 11 minutes
- Total Time: 1 hour 35 minutes
- Yield: 34 cookies 1x
- Category: Dessert
- Method: Baking
- Cuisine: American
Ingredients
Chocolate Thumbprint Cookies
- 1 1/2 cups (188 g) all-purpose flour, spooned and leveled
- 1/2 cup (40 g) cocoa powder, Dutch process
- 1/2 tsp salt
- 1/2 tsp baking powder
- 3/4 cup (168 g) unsalted butter, softened
- 3/4 cup (165 g) light brown sugar, packed
- 1/4 cup (50 g) granulated white sugar
- 2 egg yolks, at room temperature
- 1 1/2 tsp vanilla bean paste or extract
Chocolate Ganache
- 1 cup (200 g) semi-sweet chocolate chips
- 1/2 cup (120 ml) heavy whipping cream
- Nonpareils for sprinkling on top, optional
Instructions
- Prepare Dry Ingredients: In a medium bowl, whisk together flour, cocoa powder, salt, and baking powder until well combined. Set aside.
- Cream Butter and Sugars: In a large bowl, use an electric mixer to cream the softened butter with the light brown sugar and granulated white sugar for about two minutes until the mixture is light and fluffy.
- Add Egg Yolks and Vanilla: Mix in the egg yolks and vanilla bean paste or extract until the dough is pale and fluffy, approximately 1 to 2 minutes.
- Combine Wet and Dry Ingredients: Gradually add the dry ingredient mixture into the wet ingredients and mix just until fully combined without overmixing.
- Shape Dough Balls: Scoop the dough into 34 equal portions, about 1 tablespoon each, and roll into smooth balls. Place the balls onto two parchment-lined baking sheets.
- Create Indents: Using a 1/4 teaspoon measure, gently press down on the center of each dough ball to create an indent. Chill the shaped dough on baking sheets in the refrigerator for at least one hour to firm up.
- Preheat Oven: Heat oven to 350°F (175°C).
- Bake Cookies: Arrange the chilled dough balls about 1 1/2 inches apart on the baking sheets. Bake for 9 to 11 minutes, aiming for about 10 minutes for perfect doneness.
- Refine Indents: Right after baking, press the centers with a 1/4 teaspoon again if the indents have puffed up. Use a circular cookie cutter to reshape each cookie and maintain a neat round shape while they are still hot.
- Cool Cookies: Let the cookies cool on the baking sheets for 5 minutes before transferring to a wire rack to cool completely.
- Make Ganache: Place chocolate chips in a small heatproof bowl. Heat heavy cream in the microwave or on the stove until just about to boil. Pour the hot cream over the chocolate chips and let sit for 1 minute, then stir gently until smooth and glossy.
- Fill Cookies: Spoon about 1 teaspoon of ganache into the indent of each cooled cookie, adding more if space allows.
- Add Toppings: Sprinkle nonpareils or other decorative sprinkles over the ganache if desired.
- Set Ganache: Chill the filled cookies in the refrigerator for 10 to 15 minutes to allow the ganache to set firmly.
- Storage: Store any leftovers in an airtight container at room temperature or refrigerated for up to three days.
Notes
- Use Dutch process cocoa powder for a richer chocolate flavor and darker color.
- Allowing the dough balls to chill makes them easier to handle and helps the cookies maintain their shape during baking.
- Pressing the center after baking helps preserve the thumbprint well for the ganache filling.
- Vanilla bean paste adds a more intense flavor than extract, but either works well.
- Store cookies in an airtight container to keep them fresh up to three days.
- To intensify the chocolate ganache, use a mix of semi-sweet and bittersweet chocolate chips.
Keywords: Chocolate cookies, thumbprint cookies, chocolate ganache, easy chocolate cookie recipe, holiday cookies, homemade cookies

